Genetic characterization of low pathogenic H5N1 and co-circulating avian influenza viruses in wild mallards (Anas platyrhynchos) in Belgium, 2008.
Identifieur interne : 000062 ( Main/Exploration ); précédent : 000061; suivant : 000063Genetic characterization of low pathogenic H5N1 and co-circulating avian influenza viruses in wild mallards (Anas platyrhynchos) in Belgium, 2008.
Auteurs : S. Van Borm [Belgique] ; D. Vangeluwe ; M. Steensels ; O. Poncin ; T. Van Den Berg ; B. LambrechtSource :
- Avian pathology : journal of the W.V.P.A [ 1465-3338 ] ; 2011.
Descripteurs français
- KwdFr :
- Analyse de regroupements, Analyse de séquence d'ADN (médecine vétérinaire), Animaux, Belgique (épidémiologie), Biologie informatique, Canards, Clonage moléculaire, Données de séquences moléculaires, Grippe chez les oiseaux (épidémiologie), Génome viral (génétique), Maladies des oiseaux (virologie), Maladies des oiseaux (épidémiologie), Modèles génétiques, Phylogénie, RT-PCR (médecine vétérinaire), Réaction de polymérisation en chaine en temps réel (médecine vétérinaire), Sous-type H1N1 du virus de la grippe A (génétique), Sous-type H5N1 du virus de la grippe A (génétique), Sous-type H5N1 du virus de la grippe A (pathogénicité), Surveillance de l'environnement (), Séquence nucléotidique, Épidémiosurveillance.
- MESH :
- génétique : Génome viral, Sous-type H1N1 du virus de la grippe A, Sous-type H5N1 du virus de la grippe A.
- médecine vétérinaire : Analyse de séquence d'ADN, RT-PCR, Réaction de polymérisation en chaine en temps réel.
- pathogénicité : Sous-type H5N1 du virus de la grippe A.
- virologie : Maladies des oiseaux.
- épidémiologie : Belgique, Grippe chez les oiseaux, Maladies des oiseaux.
- Analyse de regroupements, Animaux, Biologie informatique, Canards, Clonage moléculaire, Données de séquences moléculaires, Modèles génétiques, Phylogénie, Surveillance de l'environnement, Séquence nucléotidique, Épidémiosurveillance.
- Wicri :
- geographic : Belgique.
English descriptors
- KwdEn :
- Animals, Base Sequence, Belgium (epidemiology), Bird Diseases (epidemiology), Bird Diseases (virology), Cloning, Molecular, Cluster Analysis, Computational Biology, Ducks, Environmental Monitoring (statistics & numerical data), Epidemiological Monitoring, Genome, Viral (genetics), Influenza A Virus, H1N1 Subtype (genetics), Influenza A Virus, H5N1 Subtype (genetics), Influenza A Virus, H5N1 Subtype (pathogenicity), Influenza in Birds (epidemiology), Models, Genetic, Molecular Sequence Data, Phylogeny, Real-Time Polymerase Chain Reaction (veterinary), Reverse Transcriptase Polymerase Chain Reaction (veterinary), Sequence Analysis, DNA (veterinary).
- MESH :
- geographic , epidemiology : Belgium.
- epidemiology : Bird Diseases, Influenza in Birds.
- genetics : Genome, Viral, Influenza A Virus, H1N1 Subtype, Influenza A Virus, H5N1 Subtype.
- pathogenicity : Influenza A Virus, H5N1 Subtype.
- statistics & numerical data : Environmental Monitoring.
- veterinary : Real-Time Polymerase Chain Reaction, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA.
- virology : Bird Diseases.
- Animals, Base Sequence, Cloning, Molecular, Cluster Analysis, Computational Biology, Ducks, Epidemiological Monitoring, Models, Genetic, Molecular Sequence Data, Phylogeny.
Abstract
As part of a long-term wild bird monitoring programme, five different low pathogenic (LP) avian influenza viruses (AIVs) were isolated from wild mallards (subtypes H1N1, H4N6, H5N1, H5N3, and H10N7). A LP H5N1 and two co-circulating (same location, same time period) viruses were selected for full genome sequencing. An H1N1 (A/Anas platyrhynchos/Belgium/09-762/2008) and an H5N1 virus (A/Anas platyrhynchos/Belgium/09-762-P1/2008) were isolated on the same day in November 2008, then an H5N3 virus (A/Anas platyrhynchos/09-884/2008) 5 days later in December 2008. All genes of these co-circulating viruses shared common ancestors with recent (2001 to 2007) European wild waterfowl influenza viruses. The H5N1 virus shares genome segments with both the H1N1 (PB1, NA, M) and the H5N3 (PB2, HA) viruses, and all three viruses share the same NS sequence. A double infection with two different PA segments from H5N1 and from H5N3 could be observed for the H1N1 sample. The observed gene constellations resulted from multiple reassortment events between viruses circulating in wild birds in Eurasia. Several internal gene segments from these 2008 viruses and the N3 sequence from the H5N3 show homology with sequences from 2003 H7 outbreaks in Italy (LP) and the Netherlands (highly pathogenic). These data contribute to the growing sequence evidence of the dynamic nature of the avian influenza natural reservoir in Eurasia, and underline the importance of monitoring AIV in wild birds. Genetic information of potential hazard to commercial poultry continues to circulate in this reservoir, including H5 and H7 subtype viruses and genes related to previous AIV outbreaks.
DOI: 10.1080/03079457.2011.621410
PubMed: 22107096
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Van Borm</name><affiliation wicri:level="1"><nlm:affiliation>Department of Virology, Veterinary and Agrochemical Research Center, Ukkel, Belgium. stevenvanborm@var.fgov.be</nlm:affiliation><country xml:lang="fr">Belgique</country><wicri:regionArea>Department of Virology, Veterinary and Agrochemical Research Center, Ukkel</wicri:regionArea><wicri:noRegion>Ukkel</wicri:noRegion></affiliation></author><author><name sortKey="Vangeluwe, D" sort="Vangeluwe, D" uniqKey="Vangeluwe D" first="D" last="Vangeluwe">D. Vangeluwe</name></author><author><name sortKey="Steensels, M" sort="Steensels, M" uniqKey="Steensels M" first="M" last="Steensels">M. Steensels</name></author><author><name sortKey="Poncin, O" sort="Poncin, O" uniqKey="Poncin O" first="O" last="Poncin">O. Poncin</name></author><author><name sortKey="Van Den Berg, T" sort="Van Den Berg, T" uniqKey="Van Den Berg T" first="T" last="Van Den Berg">T. Van Den Berg</name></author><author><name sortKey="Lambrecht, B" sort="Lambrecht, B" uniqKey="Lambrecht B" first="B" last="Lambrecht">B. Lambrecht</name></author></analytic><series><title level="j">Avian pathology : journal of the W.V.P.A</title><idno type="eISSN">1465-3338</idno><imprint><date when="2011" type="published">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Base Sequence</term><term>Belgium (epidemiology)</term><term>Bird Diseases (epidemiology)</term><term>Bird Diseases (virology)</term><term>Cloning, Molecular</term><term>Cluster Analysis</term><term>Computational Biology</term><term>Ducks</term><term>Environmental Monitoring (statistics & numerical data)</term><term>Epidemiological Monitoring</term><term>Genome, Viral (genetics)</term><term>Influenza A Virus, H1N1 Subtype (genetics)</term><term>Influenza A Virus, H5N1 Subtype (genetics)</term><term>Influenza A Virus, H5N1 Subtype (pathogenicity)</term><term>Influenza in Birds (epidemiology)</term><term>Models, Genetic</term><term>Molecular Sequence 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du virus de la grippe A (génétique)</term><term>Sous-type H5N1 du virus de la grippe A (pathogénicité)</term><term>Surveillance de l'environnement ()</term><term>Séquence nucléotidique</term><term>Épidémiosurveillance</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>Belgium</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Bird Diseases</term><term>Influenza in Birds</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Genome, Viral</term><term>Influenza A Virus, H1N1 Subtype</term><term>Influenza A Virus, H5N1 Subtype</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Génome viral</term><term>Sous-type H1N1 du virus de la grippe A</term><term>Sous-type H5N1 du virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Analyse de séquence 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monitoring programme, five different low pathogenic (LP) avian influenza viruses (AIVs) were isolated from wild mallards (subtypes H1N1, H4N6, H5N1, H5N3, and H10N7). A LP H5N1 and two co-circulating (same location, same time period) viruses were selected for full genome sequencing. An H1N1 (A/Anas platyrhynchos/Belgium/09-762/2008) and an H5N1 virus (A/Anas platyrhynchos/Belgium/09-762-P1/2008) were isolated on the same day in November 2008, then an H5N3 virus (A/Anas platyrhynchos/09-884/2008) 5 days later in December 2008. All genes of these co-circulating viruses shared common ancestors with recent (2001 to 2007) European wild waterfowl influenza viruses. The H5N1 virus shares genome segments with both the H1N1 (PB1, NA, M) and the H5N3 (PB2, HA) viruses, and all three viruses share the same NS sequence. A double infection with two different PA segments from H5N1 and from H5N3 could be observed for the H1N1 sample. The observed gene constellations resulted from multiple reassortment events between viruses circulating in wild birds in Eurasia. Several internal gene segments from these 2008 viruses and the N3 sequence from the H5N3 show homology with sequences from 2003 H7 outbreaks in Italy (LP) and the Netherlands (highly pathogenic). These data contribute to the growing sequence evidence of the dynamic nature of the avian influenza natural reservoir in Eurasia, and underline the importance of monitoring AIV in wild birds. Genetic information of potential hazard to commercial poultry continues to circulate in this reservoir, including H5 and H7 subtype viruses and genes related to previous AIV outbreaks.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">22107096</PMID><DateCompleted><Year>2012</Year><Month>03</Month><Day>19</Day></DateCompleted><DateRevised><Year>2012</Year><Month>11</Month><Day>15</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1465-3338</ISSN><JournalIssue CitedMedium="Internet"><Volume>40</Volume><Issue>6</Issue><PubDate><Year>2011</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Avian pathology : journal of the W.V.P.A</Title><ISOAbbreviation>Avian Pathol.</ISOAbbreviation></Journal><ArticleTitle>Genetic characterization of low pathogenic H5N1 and co-circulating avian influenza viruses in wild mallards (Anas platyrhynchos) in Belgium, 2008.</ArticleTitle><Pagination><MedlinePgn>613-28</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1080/03079457.2011.621410</ELocationID><Abstract><AbstractText>As part of a long-term wild bird monitoring programme, five different low pathogenic (LP) avian influenza viruses (AIVs) were isolated from wild mallards (subtypes H1N1, H4N6, H5N1, H5N3, and H10N7). A LP H5N1 and two co-circulating (same location, same time period) viruses were selected for full genome sequencing. An H1N1 (A/Anas platyrhynchos/Belgium/09-762/2008) and an H5N1 virus (A/Anas platyrhynchos/Belgium/09-762-P1/2008) were isolated on the same day in November 2008, then an H5N3 virus (A/Anas platyrhynchos/09-884/2008) 5 days later in December 2008. All genes of these co-circulating viruses shared common ancestors with recent (2001 to 2007) European wild waterfowl influenza viruses. The H5N1 virus shares genome segments with both the H1N1 (PB1, NA, M) and the H5N3 (PB2, HA) viruses, and all three viruses share the same NS sequence. A double infection with two different PA segments from H5N1 and from H5N3 could be observed for the H1N1 sample. The observed gene constellations resulted from multiple reassortment events between viruses circulating in wild birds in Eurasia. Several internal gene segments from these 2008 viruses and the N3 sequence from the H5N3 show homology with sequences from 2003 H7 outbreaks in Italy (LP) and the Netherlands (highly pathogenic). These data contribute to the growing sequence evidence of the dynamic nature of the avian influenza natural reservoir in Eurasia, and underline the importance of monitoring AIV in wild birds. Genetic information of potential hazard to commercial poultry continues to circulate in this reservoir, including H5 and H7 subtype viruses and genes related to previous AIV outbreaks.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Van Borm</LastName><ForeName>S</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Virology, Veterinary and Agrochemical Research Center, Ukkel, Belgium. stevenvanborm@var.fgov.be</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vangeluwe</LastName><ForeName>D</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Steensels</LastName><ForeName>M</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Poncin</LastName><ForeName>O</ForeName><Initials>O</Initials></Author><Author ValidYN="Y"><LastName>van den Berg</LastName><ForeName>T</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Lambrecht</LastName><ForeName>B</ForeName><Initials>B</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Avian Pathol</MedlineTA><NlmUniqueID>8210638</NlmUniqueID><ISSNLinking>0307-9457</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001530" MajorTopicYN="N" Type="Geographic">Belgium</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001715" MajorTopicYN="N">Bird Diseases</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003001" MajorTopicYN="N">Cloning, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019295" MajorTopicYN="N">Computational Biology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004372" MajorTopicYN="Y">Ducks</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004784" MajorTopicYN="N">Environmental Monitoring</DescriptorName><QualifierName UI="Q000706" MajorTopicYN="Y">statistics & numerical data</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D062665" MajorTopicYN="N">Epidemiological Monitoring</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016679" MajorTopicYN="N">Genome, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D053118" MajorTopicYN="N">Influenza A Virus, H1N1 Subtype</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D053124" MajorTopicYN="N">Influenza A Virus, H5N1 Subtype</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005585" MajorTopicYN="N">Influenza in Birds</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008957" MajorTopicYN="N">Models, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D060888" MajorTopicYN="N">Real-Time Polymerase Chain Reaction</DescriptorName><QualifierName UI="Q000662" MajorTopicYN="N">veterinary</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020133" MajorTopicYN="N">Reverse Transcriptase Polymerase Chain Reaction</DescriptorName><QualifierName UI="Q000662" MajorTopicYN="N">veterinary</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName><QualifierName UI="Q000662" MajorTopicYN="N">veterinary</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2011</Year><Month>11</Month><Day>24</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2011</Year><Month>11</Month><Day>24</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2012</Year><Month>3</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">22107096</ArticleId><ArticleId IdType="doi">10.1080/03079457.2011.621410</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Belgique</li></country></list><tree><noCountry><name sortKey="Lambrecht, B" sort="Lambrecht, B" uniqKey="Lambrecht B" first="B" last="Lambrecht">B. Lambrecht</name><name sortKey="Poncin, O" sort="Poncin, O" uniqKey="Poncin O" first="O" last="Poncin">O. Poncin</name><name sortKey="Steensels, M" sort="Steensels, M" uniqKey="Steensels M" first="M" last="Steensels">M. Steensels</name><name sortKey="Van Den Berg, T" sort="Van Den Berg, T" uniqKey="Van Den Berg T" first="T" last="Van Den Berg">T. Van Den Berg</name><name sortKey="Vangeluwe, D" sort="Vangeluwe, D" uniqKey="Vangeluwe D" first="D" last="Vangeluwe">D. Vangeluwe</name></noCountry><country name="Belgique"><noRegion><name sortKey="Van Borm, S" sort="Van Borm, S" uniqKey="Van Borm S" first="S" last="Van Borm">S. Van Borm</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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